Receiving a letter about an HMRC compliance check can feel intimidating – even if you’ve done nothing wrong.
The good news? An HMRC compliance check does not automatically mean you’re in trouble. In many cases, it’s simply a routine review. However, how you respond – and how prepared you are – can significantly affect the outcome.
Here’s what every business owner should know about an HMRC compliance check.
What Is an HMRC Compliance Check?
An HMRC compliance check is when HMRC reviews your tax affairs to ensure you’re paying the correct amount of tax.
They may review:
- Self Assessment tax returns
- Corporation Tax returns
- PAYE records
- VAT returns
- CIS submissions
- Specific transactions such as R&D claims or large expense deductions
An HMRC compliance check can be random, but it is often triggered by inconsistencies, unusual figures, late submissions, or industry-specific campaigns.
Being selected does not automatically mean wrongdoing.
Why Do Businesses Get Selected for an HMRC Compliance Check?
Common triggers include:
- Large fluctuations in turnover or profit
- Consistently low profit margins in high-profit sectors
- High expense claims compared to income
- VAT repayment claims
- CIS irregularities
- Late or amended tax returns
HMRC uses increasingly data-driven systems. If your figures look unusual compared to similar businesses, it can increase the likelihood of an HMRC compliance check.
What Happens During an HMRC Compliance Check?
During an HMRC compliance check, HMRC may:
- Request specific documents (invoices, bank statements, payroll records)
- Ask for explanations of certain transactions
- Arrange a visit to your business premises (in some cases)
- Extend the scope if further issues arise
An HMRC compliance check can last weeks or even months, depending on complexity.
Having professional representation ensures:
- Clear, controlled communication
- Only relevant information is provided
- Deadlines are met
- You avoid accidental over-disclosure
How to Prepare Before an HMRC Compliance Check Ever Happens
The best way to handle an HMRC compliance check is to be inspection-ready at all times.
1. Keep Accurate, Up-to-Date Records
- Use cloud accounting software
- Reconcile bank accounts regularly
- Keep digital copies of invoices and receipts
- Separate business and personal finances
Poor record-keeping is one of the main reasons penalties arise during an HMRC compliance check.
2. Be Clear on What You’re Claiming
Problems during an HMRC compliance check often stem from:
- Personal expenses claimed through the business
- Incorrect home office claims
- Travel expenses that don’t qualify
- Director’s loan account issues
- Incorrect VAT recovery
If you’re unsure whether something is allowable, seek advice before submitting returns.
3. File Returns On Time
Late submissions increase your risk profile. Even if payment is difficult, filing on time reduces the likelihood of triggering an HMRC compliance check.
4. Avoid Aggressive Tax Schemes
If something sounds too good to be true, it probably is.
Avoid:
- Artificial avoidance schemes
- “Guaranteed” tax refunds
- Inflated R&D claims
- Loan charge arrangements
HMRC actively investigates marketed avoidance schemes, and penalties following an HMRC compliance check can be severe.
What To Do If You Receive an HMRC Compliance Check Letter
If you are notified of an HMRC compliance check:
Don’t Ignore It
Deadlines apply. Ignoring correspondence can escalate the issue.
Don’t Panic
Many HMRC compliance checks are resolved without major consequences when handled correctly.
Contact Your Accountant Immediately
Professional support during an HMRC compliance check can:
- Assess potential risk areas
- Prepare structured responses
- Liaise directly with HMRC
- Minimise penalties where errors exist
What If Errors Are Found During an HMRC Compliance Check?
If mistakes are discovered during an HMRC compliance check, outcomes depend on:
- Whether the error was careless or deliberate
- Whether disclosure was prompted or voluntary
- Your level of cooperation
Penalties can range from no penalty for genuine mistakes to higher percentages for deliberate concealment.
Cooperation significantly reduces penalties during an HMRC compliance check.
Why Ongoing Advice Matters
Businesses that handle an HMRC compliance check smoothly typically have:
- Clean bookkeeping
- Regular financial reviews
- Clear separation of personal and business finances
- Proactive tax planning
- Professional representation
Good accountants don’t just submit returns – they reduce risk long before an HMRC compliance check arises.
Final Thoughts
An HMRC compliance check doesn’t need to be overwhelming.
With organised records, compliant tax returns, and professional advice, most HMRC compliance checks are manageable.
Preparation is always easier than reaction.
If you’re unsure whether your records would stand up to an HMRC compliance check, it’s far better to review things now than when a letter lands on your desk.
Need Support?
Crossley & Davis supports businesses in Bolton and across England with proactive tax advice, clean bookkeeping systems, and professional representation during an HMRC compliance check.
If you want peace of mind that your business is inspection-ready, get in touch with our team today.

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